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2015Analysis
2015 Analysis Guide "Quick Start" for Xenia 1 Initial Setup 1 Getting the Code 1 Running the Code 1. Initial Setup: This will show you how to get our cod...
AdminGroup
%IF{"(NOT defined GROUP) OR $GROUP = ''" then=' How to add the first administrator If you haven\'t previously set up an administrator, follow these steps: (Note:...
AdministrativeDualPrimaryCluster
Nevis particle physics administrative cluster This page is obsolete. The complexity and failure modes of HA clusters was too much for a small site like ours. This...
AdministrativeSinglePrimaryCluster
Nevis particle physics administrative cluster This is a description of the organization of the administrative computers on the Nevis Linux cluster . The emphas...
Alma9ekumen
AlmaLinux 9 on ekumen.nevis.columbia.edu At present, I've positioned ekumen to act as a testbed as we contemplate a transition to AlmaLinux 9 (a free variant of R...
Alma9lee
AlmaLinux 9 on lee.nevis.columbia.edu The machine lee.nevis.columbia.edu (after T.D. Lee, a Noble Prize winning Columbia Professor) was formerly used for the Neut...
AlmaLinux9UpgradePlan
AlmaLinux 9 Upgrade Plan This is WilliamSeligman's proposal for the AlmaLinux 9 upgrade. Please contact him if you have any questions or suggestions. The upgrades...
AlmaLinux9analysis
AlmaLinux 9 modifying your analysis scripts This is a brief guide to modifying your analysis scripts when you switch to AlmaLinux 9. For more details, see the ...
AlpineWithoutPasswords
Alpine without a password How to use SSH and Alpine so that you don't have to type in a password when you start your Alpine session. Alpine has the ability to con...
Annex
Annex conference room reservations. (This page has been "under construction" for more than a decade, waiting for one of the Nevis Annex managers to give it some a...
ApplicationsServer
Nevis Applications Server The students and teachers at Nevis require the use of many common programs: ROOT, CERNLIB, Geant4, and so on. It would be a waste of di...
AstroGroup
AstroGroup * Member list (comma separated list): * Set GROUP = .AdminGroup, .NathalieDeRuette * Persons/group who can change the list: * Set ALL...
AtlasGroup
AtlasGroup * Set GROUP = .AdminGroup, .GustaafBrooijmans, .AlexPenson, .TimothyAndeen, .JohnParsons, .HenryHunt, .InesOchoa, .DanielWilliams, .BrianKirby, .Julia...
August2009SystemUpgrades
August 2009 System Upgrades There's only a two week "window" in which I can perform these upgrades with the least impact on the Nevis research groups. General p...
Automount
Nevis Linux Cluster Automount This page describes how automount is used at Nevis to link systems on the cluster. The naming scheme for automount directo...
BackupMacLaptops
As of Nov 2021, this service is experimental. The Time Machine backup is located on a Synology NAS server whose operation, at least for this purpose, can be flake...
BatchDetails
Details of running condor at Nevis Warning signs If your condor script or program does any of the following, it's a warning sign that your job might crash (or wo...
BillZajc
* Name: William Zajc * Email: zajc #64;nevis.columbia.edu * Office: * Location: NevisResearchBuilding * University: * Nevis Group: DOE * Comme...
BrookhavenSite
.WilliamSeligman 29 Jul 2005
Calendar
Nevis Calendars There are four calendar software packages installed on the Nevis web server... and three sets of calendar URLs for you to remember. This web page ...
CentOS7Upgrade
CentOS 7 upgrades Scientific Linux 6 (SL6) will reach the end of its maintenance life on 30 Nov 2020. We have to consider what to do with those systems that are s...
CernSite
.WilliamSeligman 29 Jul 2005
Certificates
Nevis Certificates The notes on this page are now obsolete. Columbia University now provides SSL certificates for its department without charge. We've switched to...
ChangeYourPassword
How to change your password on the Nevis Linux Cluster The primary audience of this page are those who don't login to the Nevis Linux cluster directly, bu...
Computing
Particle/Nuclear physics computing at Nevis Labs The following links will provide you with information on the computer operations and services available. (Some of...
Conda
Conda Conda is a popular package management system. Here are some tips and tricks for using that system on the Nevis particle physics systems. Before you go to c...
Condor
Condor Basics This page describes some of the basics for setting up jobs on the particle physics computer cluster at Nevis. For a quick introduction to condor at...
ConfigureMail
Configuring your mail reader I recommend you use Thunderbird for your mail program. Although I support Outlook at Nevis, I don't encourage its use. Unfortunate...
ConfigureSpamAssassin
Configuring SpamAssassin at Nevis Short version Look at ~seligman/.spamassassin/user_prefs. Copy what's relevant to your own ~/.spamassassin/user_prefs and edit ...
ConfiguringAlpine
Configuring alpine Alpine is a text only screen based mail program. (The previous version was called pine. This version is still present on some older systems at ...
CorosyncSinglePrimaryConfiguration
Nevis particle physics administrative cluster configuration Archived 20 Sep 2013: The high availability cluster has been set aside in favor of a more traditional ...
CtaGroup
CtaGroup * Member list (comma separated list): * Set GROUP = .AdminGroup, .DanielNieto, .BrianHumensky, .MarleneDoert, .AndriyPetrashyk, .ZacharyZhong, .D...
DAEdALUS
Generic DAEdALUS account page This is the "home page" of the generic DAEdALUS account on the TWiki. This account is meant for people who participate in the priva...
DNS
DNS servers for the Nevis particle physics groups A DNS resolver or server is a system that's queried to translate an IP name (like mail.nevis.columbia.edu) into ...
DZeroGroup
DZeroGroup * Set GROUP = .AdminGroup, .GustaafBrooijmans * Set ALLOWTOPICCHANGE = .DZeroGroup Related topics: , WikiGroups, .AccessControl .WilliamSeligm...
DiskGuide
Linux Cluster Disk Guide The most important things to learn from this page: * /home and /share partitions are backed up. * /data and /scratch are not. * ...
DiskSharing
Disk sharing and the condor batch system Background You don't want to read this page. You just want to submit your jobs and not think about disk files or whe...
DotForward
Nevis .forward Tips Some tips associated with a mail forwarding file, either /a/mail/forward/$user or ~/.forward. You can use a forwarding file to forward mail ...
DoubleChooz
Generic DoubleChooz account page This is the "home page" of the generic DoubleChooz account on the TWiki. This account is meant for people who participate in the...
EBubbleForward
eBubble forwarding page. This page is just a placeholder. Here's where you want to go: * If you're interested in the private discussions and documents related ...
EBubbleGroup
EBubbleGroup * Set GROUP = .AdminGroup, .JeremyDodd * Set ALLOWTOPICCHANGE = .AdminGroup, .EBubbleGroup Related topics: , WikiGroups, .AccessControl .Willi...
EnvironmentModules
Environment modules on the Nevis particle physics Linux cluster Environment modules are a way of setting up a Linux shell environment. On the cluster, we ...
EthicsTraining
NSF Scientific Research Ethics Training Here are the steps needed to complete this training course. Allow at least one hour to complete the course. Note: The exac...
Evd
LArLite event display (evd) at Nevis To set up the event display using the bash shell (the only one supported), use the following command: source /nevis/amsterdam...
FAQ
Frequently asked questions and tips I've forgotten my password. See the .ResetPassword page. Why can't I edit a page or create a new one? You can't make changes...
FedoraVersusScientificLinux
Should we switch from Fedora to Scientific Linux? Background Back in 2004, when Redhat stopped offering their distribution for free, I asked representatives from...
ForwardMail
Nevis Mail Forwarding Tips Some tips on forwarding your mail, both while you're here at Nevis, and when the time comes for you to leave. Fowarding your mail When...
FutureTevGroup
FutureTevGroup * Member list (comma separated list): * Set GROUP = .AdminGroup, .NeutrinoGroup, .NuSOnGGroup, .FutureTev * Persons/group who can chang...
GENIE
Running GENIE at Nevis To run the GENIE Neutrino Monte Carlo at Nevis, you can take one of two approaches: * Use a software suite (GENIE and its external packa...
Git
Git Below are basic commands to get around git. There are plenty more available, and your usage will become complicated as you go. You may want to read the git bo...
Glossary
Glossary Some TLAs and definitions to help you get started. (What's a "TLA"? Look it up below.) The terms are not in alphabetical order; they are roughly in ord...
HiddenPackages
Hidden directories and package management If you use either conda or pip to manage software packages, or work with keras,you may have encountered something st...
IAXO
The IAXO account page This page is just a placeholder. Here's where you want to go: * If you're interested in the private discussions and documents related to ...
IMAPFileSwitch
IMAP file switch This page discusses moving your IMAP mail files to the Nevis mail server. If you use POP instead of IMAP, you can ignore this page. Note that th...
IMAPMailFiles
IMAP mail files Short version: Don't change this. You only have to go through the rest of this page if, for some reason, you don't want to keep your mail files i...
IPython
Jupyter notebook server at Nevis Jupyter (formerly IPython) has become a popular tool for interactive physics analysis. Here are some examples of what you can do ...
IaxoGroup
IaxoGroup * Member list (comma separated list): * Set GROUP = .AdminGroup, .JooyunWoo, .EftychiaKotsiou, .YueYu, .MarcelaStern, .KerstinPerez, .VyshnaviSab...
InitialLaptopSetup
Initial laptop setup for the Nevis particle physics Linux cluster This page is intended for those students, guests, and researchers connecting to Nevis for the fi...
JooyunWoo
My Links * .WelcomeGuest starting points on TWiki * Sandbox. try out Wiki on your own * Sandbox.JooyunWooSandbox just for me * FermiLATJW * ...
JupyterROOTContainers
Jupyter/ROOT Containers Users of the Nevis particle physics Linux cluster have access to a notebook server that lets them execute Python and ROOT C scripts o...
JupyterTerminal
Using Terminal in Jupyter This page focuses on issues when using the Terminal emulator (terminado) when running Jupyter or JupyterLab on notebook.nevis.columbia.e...
Kerberos
Accessing the FNAL Kerberos Realm from Nevis The Computing Division at Fermilab is implementing a strong authentication model for their system security. This imp...
LArSoftAtNevis
LArSoft at Nevis This documents how to use the LArSoft and MicroBooNE software as managed by mrb git. If you are looking for older LArSoft versions managed by SRT...
LArSoftAtNevisSRT
LArSoft at Nevis The Nevis copy of the LArSoft installation is currently in /a/share/westside/seligman/microboone/LArSoft. As of 21 Jan 2014, the following Fermil...
LinuxCluster
Nevis Linux Cluster Overview The Nevis Linux Cluster may seem a bit confusing at first. It's actually several smaller clusters linked together. Each working gro...
LinuxFAQ
Nevis Linux Cluster FAQ The answers to many Frequently Asked Questions about the Nevis Linux cluster. It covers subjects not addressed by the other Linux cluste...
ListOfMachines
Nevis Linux Cluster Node Names These are the names of the computers in the Nevis Linux Cluster. Some machines that are not listed: * the systems on the Nevis ...
Logos
Nevis.WilliamSeligman 2014 05 30 * Large version of Nevis wiki logo: * Small version of Nevis wiki logo: * Banner logo for wiki: ...
Mail
Nevis Mail The Nevis mail domain is nevis.columbia.edu. When you are given an account on the Linux cluster, a mail account is established for you with the same na...
Mail-relatedFiles
Files that affect your mail The default mail setup at Nevis works for most users. However, if you'd like finer control over your e mail, mail notifications, mail...
MailFilters
Mail Filters on the Nevis mail server A "mail filter" is a program that controls how your mail is delivered to you. The default mail filter on the Nevis mail serv...
MailPictorialGuide
Pictorial guide for checking your mail security For the most part, mail readers will automatically select encrypted options when you first set up your email accou...
MailPorts
Ports on the Nevis Mail Server This is a quick guide to configuring a mail reader for the Nevis mail server. If you need more details, try the configure mail ...
MailServerUpgrade
Mail Server Upgrade 15 Aug 2016 I propose upgrading the Nevis mail server on Monday, 15 Aug 2016, at 12:45PM Eastern Time. If all goes smoothly, the mail server w...
MailingListServer
Nevis Mailing List Server Help Page If you are looking for the main Nevis web site, or information about Nevis mail , click on the appropriate links in this se...
MicroBooNE
The MicroBooNE account page This is the "home page" of the generic MicroBooNE account on the TWiki. This account is meant for collaborators on the MicroBooNE exp...
MoonTables
Moon Tables "So good bye, dear, and amen; here's hoping we meet now and then..." I've provided these moon tables for about three decades. At this point, I think ...
NUISANCE
Running NUISANCE at Nevis NUISANCE is a tool for comparing the output of different neutrino event generators, including GENIE, NuWro, and GiBUU. Super quick gui...
NestedIMAPFolders
Nested IMAP folders Most mail readers are capable of displaying nested IMAP folders, as shown to the left. However, they don't allow you to create the neste...
NetworkParameters
Network parameters These are the network parameters for a device on one of the Nevis networks . If a device uses DHCP, it will pick up this information automa...
Networks
Nevis Networks and Firewall Restrictions This web page contains a discussion of the Nevis network environment, including some of the traffic restrictions imposed ...
NeutrinoGroup
NeutrinoGroup * Set GROUP = .AdminGroup, .WilliamSeligman, .GeorgiaKaragiorgi, .JanetConrad, .MikeShaevitz, .LeslieCamilleri, .GuanqunGe, .DaisyKalra, .SeokjuChu...
NeutrinoStudy
NeutrinoStudy account page This is the account page for the NeutrinoStudy account, but you probably want the NeutrinoStudy web. If you can't login to the Neutrino...
NevisARC
Nevis ARC Review Account * External ARC schedule * Internal ARC schedule
NevisAnnexOffice
.WilliamSeligman 29 Jul 2005
NevisEmblem
Nevis emblem and variants To use the emblem in your talks or other presentations, right click on an image below and select Save image as... Description Whit...
NevisResearchBuilding
* Floor plan for main floor of the research building:
NevisSeminars
Nevis Seminars The Nevis Seminar is designed to bring the different research groups at Nevis together to present their work on a monthly basis. * Where: Nevis ...
NevisWikiProblems
Problems observed with the Wiki The issues described here are probably never going to be "fixed." They're observations and characteristics of the way the Wiki a...
NuSOnG
Generic NuSOnG account page This is the "home page" of the generic NuSOnG account on the TWiki. This account is meant for people who participate in the private ...
NuclearGroup
NuclearGroup * Set GROUP = .AdminGroup, .BillZajc * Set ALLOWTOPICCHANGE = NuclearGroup Related topics: , WikiGroups, .AccessControl .WilliamSeligman 01...
OfficeLocations
The OfficeLocations topic has a list of all your offices. * NevisResearchBuilding * NevisElectronicsBuilding * NevisCyclotronBuilding * PupinCampusBui...
OldStuff
Nevis Obsolete News Items Where old status reports, news items, and links go to die. Obsolete wiki pages These topics are no longer relevant. They're here just i...
POPvsIMAP
Nevis POP versus IMAP guide This is a brief guide to the difference between using POP versus IMAP for mail. Normally, you choose which to use when you set up the ...
PacemakerDiagnostics
Basic diagnostics for the high availability cluster Archived 20 Sep 2013: The high availability cluster has been set aside in favor of a more traditional single b...
PacemakerDualPrimaryConfiguration
Nevis particle physics administrative cluster configuration Archived 20 Sep 2013: The high availability cluster has been set aside in favor of a more traditional ...
PhoneSystem
Phone system Our Voice over IP provider is 8x8 (pronounced "eight by eight"). This is a brief overview. You can find complete documentation here. Here is our phon...
Printing
Nevis Printing This page describes some basic commands related to printing on the Nevis Linux cluster . How to configure printers on your laptop If you connec...
Procmail
Using Procmail on the Nevis mail server Short version Look at /a/mail/procmailrc/seligman. Edit your own /a/mail/procmailrc/$USER and include/edit the recipes fr...
PupinCampusBuilding
.WilliamSeligman 29 Jul 2005
RaphaelGalea
My Links * .WelcomeGuest starting points on Wiki * Sandbox. try out Wiki on your own * Sandbox.RaphaelGaleaSandbox just for me * * My P...
RealEmail
Is the message real? The spammers are becoming more sophisticated in how they craft fake e mail messages. Here are some tips to judge whether a e mail message, es...
RegisterApprovalEmail
?action=approve;code=;refere\ e="}% ?action=disapprove;code=;refer\ ee="}%
RemoteMicroBooNEShifts
Remote MicroBooNE Shifts Official links * MicroBooNE Operations Wiki * Off site shift procedures (note that most of these instructions are implemented for ...
ResearchGroup
ResearchGroup * Set GROUP = .AdminGroup, .AtlasGroup, .NuclearGroup, .NeutrinoGroup, .CtaGroup Related topics: , WikiGroups, .AccessControl .WilliamSeligman ...
SSHTips
SSH Tips Some practical tips on using ssh. SSH without passwords Why would you want to do this? * All the systems at Nevis will block your IP address after a ...
Scanner
Nevis Scanning If you have documents to scan, the fastest and most powerful scanner at Nevis is the Ricoh IM 4000 in room 119A; it can be used as a scanner, copie...
SecureNetworkWarnings
Nevis particle physics secure network warnings There's a couple of things to know before starting to use the Nevis particle phyics web proxy or VPN . The...
Security
Nevis Security Issues Some tips on mail security can be found here. The harsh reality As research scientists, we normally don't like to think about system secur...
Services
Nevis Linux Cluster Services This is the list of which machines provide the different network services on the cluster. If some terms are unfamiliar, you can try l...
Setup
Nevis Local Software These are commands developed or enhanced at Nevis for our own use. (Other sites, such as Fermilab, have defined their own versions of these c...
Shell
Nevis Linux Cluster Shells Some comments on the UNIX shells available on the Nevis Linux cluster. In UNIX, a "shell" is the command line interface to the operat...
Sieve
Using ManageSieve on the Nevis mail server On the Nevis mail server, the Sieve protocol is handled by Pigeonhole ManageSieve Server of the Dovecot IMAP server. ...
SitePreferences
SitePreferences %MAKETEXT{ "Foswiki's default preferences are located in _1 , however settings defined here have override priority and should be used for lo...
SiteStatistics
Wiki Site Statistics = 2)" then="display: block" else="display: none" }%" Monthly Site Statistics Data Month WebsTotal WebsViewed Websupdated TopicsTo...
SoftwareGuide
Nevis Software Guide In addition to the notes below and in linked web pages, you should also look at the latest nevis linux announcements for descriptions of new ...
StudentBoxes
Nevis Student Linux Boxes May 2021: This page is now obsolete. There are no desktop systems presently available in any of these rooms. They became unnecessary as ...
StudentFileServer
Student File Server Rationale The space available in a system's /home directory is small. Space often runs out, requiring users to frantically decide what to kee...
Subversion
Subversion (svn) Subversion is a version control management system. It's useful when more than one person is making changes to a set of files, whether those files...
SymbolicMath
Symbolic math software on the Nevis Linux cluster To answer the question that led you here: No, at present we do not have Mathematica at Nevis; nor do we have Mat...
Technical
Nevis Additional Software These are programs available on the Linux cluster that are not part of a standard Linux installation. To see what versions of a pack...
TemperatureShutDown
Computer room temperature and cluster shutdown The main computer area for the Nevis particle physics groups is room 119; the ATLAS group has a separate Tier3 clus...
TurnOffJava
How to turn off Java in your web browser This page is obsolete. No modern web browser runs Java applets anymore. As of Oct 2010, Java has become a leading method ...
UNIAndNevis
Nevis Mail and the Columbia UNI Nevis Labs and Columbia University have two completely separate e mail systems. This page discusses your choices on how to connec...
Upgrade64
Upgrading the Nevis Linux cluster to a 64 bit operating system Upgrade schedule Date Systems Mail affected Tue 17 Aug 2010 morningside, riverside N...
Ups
Nevis UPS Management This page describes how Uninterruptble Power Supplies ("UPS") are monitored at Nevis. There's also a web page on which you can see the curre...
UserForm
User Form Note: This is a maintenance topic, used by the Wiki administrator. This form defines the form of the home pages of registered Wiki users listed in .. Do...
UserRegistration
%IF{"context registration_supported" then="** __ "}%" else="**" }% Read this before you attempt to register You must have a research connection with Nevis Labs...
UserRegistrationParts
User Registration components This topic contains the pieces that are assembled into the UserRegistration page. There is no need to modify this topic. If a sectio...
UsingAlpine
Using alpine in addition to another mail reader By default, alpine uses the ~/mail directory for all its mail files. This is fine if you only use alpine, but can...
VPN
VPN (Virtual Private Network) Please see secure network warnings before using VPN. Why use VPN? By using VPN, you can establish a direct connection to the ...
Vacation
How to set up vacation messages Using webmail Login to Nevis webmail: * Enter the same user name and password that you use to read your mail. * Click on Se...
VasilyJorjadze
My Links * .WelcomeGuest starting points on Wiki * Sandbox. try out Wiki on your own * Sandbox.VasilyJorjadzeSandbox just for me * * My...
VassiliPapavassiliou
My Links * .WelcomeGuest starting points on Wiki * Sandbox. try out Wiki on your own * Sandbox.VassiliPapavassiliouSandbox just for me * ...
Videoconference
Videoconferencing tools and tips The library in the Nevis research building (room 115) has various pieces of equipment to use in local and remote videoconferencin...
Viruses
Nevis Anti Virus Policy This web page describes our security precautions against viruses infecting the Nevis systems. See our SpamAssassin page for anti spam meas...
WebGuide
Nevis Web Setup Guide This is a guide on how to set up your web site at Nevis Labs. Enough information is provided to get you started. Note that in addition to t...
WebHome
Welcome to the Wiki pages of the particle and nuclear physics groups at Nevis Laboratories These Wiki pages are written by and for the particle and nuclear physi...
WebPreferences
Main Web Preferences Appearance * Set WEBBGCOLOR = #FFEFA6 * web specific background color, current color * Set SITEMAPLIST = on * Set WEBSUMMAR...
WhereIsNeutrino
Where is the Neutrino group? The link to the Neutrino web on the Wiki is http://twiki.nevis.columbia.edu/twiki/bin/viewauth/Neutrino/WebHome . If you aren't ...
WhyAWiki
The Whys and Hows of the Wiki Why bother with a Wiki? It looks complicated. A Wiki is a collaborative web environment. You can read more about it in the introd...
WhyConda
Why the shift from module load to conda? I know the shift from module load root to conda activate /usr/nevis/conda/root can be annoying. These are the reasons why...
WikiTransition
The Wiki transition In late December 2025, WilliamSeligman made the switch in the Nevis Wiki software from TWiki to Foswiki. This page discusses the reasons and c...
WikiUsers
List of Foswiki users Below is a list of users with accounts. If you want to edit topics or see protected areas of the site then you can get added to the list by ...
WilliamSeligmanLeftBar
* My Wiki home page * My Nevis web page * My page edits * Edit the menu
Wireless
Wireless routers Access The Nevis particle physics group maintains several wireless routers throughout the upper portion of the Nevis site. They are all protecte...
X11OnLaptops
Setting up X11 and OpenGL on your laptop/desktop X11 X11 is the graphics display protocol used by UNIX systems. If you're logging into one of the Nevis systems w...
Number of topics: 148
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